357 lines
11 KiB
C++
357 lines
11 KiB
C++
|
#include <algorithm>
|
||
|
#include <array>
|
||
|
#include <cstring>
|
||
|
#include <functional>
|
||
|
#include <limits>
|
||
|
#include <map>
|
||
|
#include <set>
|
||
|
#include <vector>
|
||
|
|
||
|
#include <mpi.h>
|
||
|
#include <stdio.h>
|
||
|
#include <stdlib.h>
|
||
|
#include <time.h>
|
||
|
#include <unistd.h>
|
||
|
#include <utility>
|
||
|
|
||
|
#include <fmt/format.h>
|
||
|
#include <fmt/ranges.h>
|
||
|
|
||
|
#define TAG_SEND_NUM_EDGES 1001
|
||
|
#define TAG_SEND_EDGES 1002
|
||
|
#define TAG_SEND_FINAL_RESULT 1003
|
||
|
|
||
|
typedef struct {
|
||
|
int fst;
|
||
|
int snd;
|
||
|
} pair;
|
||
|
void init_pair_type(MPI_Datatype *out);
|
||
|
|
||
|
int main(int argc, char **argv) {
|
||
|
MPI::Init(argc, argv);
|
||
|
int rank = MPI::COMM_WORLD.Get_rank(), p = MPI::COMM_WORLD.Get_size();
|
||
|
|
||
|
MPI_Datatype IntPairType;
|
||
|
init_pair_type(&IntPairType);
|
||
|
|
||
|
// One process reads the file and distributes the data to the other processes
|
||
|
// using a 1D decomposition (each rank gets approx same number of vertices).
|
||
|
#pragma region
|
||
|
FILE *fp;
|
||
|
char *line = NULL;
|
||
|
size_t len;
|
||
|
ssize_t read;
|
||
|
pair params;
|
||
|
|
||
|
if (rank == 0) {
|
||
|
|
||
|
printf("Hello\n");
|
||
|
fp = fopen(argv[1], "r");
|
||
|
if ((read = getline(&line, &len, fp)) != -1)
|
||
|
sscanf(line, "%d %d", ¶ms.fst, ¶ms.snd);
|
||
|
}
|
||
|
|
||
|
// Send the params
|
||
|
MPI_Bcast(¶ms, 1, IntPairType, 0, MPI::COMM_WORLD);
|
||
|
int total_num_nodes = params.fst;
|
||
|
int total_num_edges = params.snd;
|
||
|
int each_num_nodes = total_num_nodes / p;
|
||
|
|
||
|
// Calculate exactly how many nodes my current process holds
|
||
|
int num_my_nodes =
|
||
|
rank == p - 1 ? total_num_nodes - rank * each_num_nodes : each_num_nodes;
|
||
|
int my_nodes[num_my_nodes];
|
||
|
|
||
|
std::function<std::pair<int, int>(int)> node_range =
|
||
|
[p, total_num_nodes, each_num_nodes](int process) {
|
||
|
int start = process * each_num_nodes;
|
||
|
int end = process == p - 1 ? total_num_nodes : start + each_num_nodes;
|
||
|
return std::make_pair(start, end);
|
||
|
};
|
||
|
|
||
|
// Read the edges
|
||
|
int num_my_edges;
|
||
|
pair *my_edges;
|
||
|
int counts[p], displs[p];
|
||
|
if (rank == 0) {
|
||
|
line = NULL;
|
||
|
pair all_edges[total_num_edges];
|
||
|
|
||
|
// For the current process, what's the last node we're expecting to see?
|
||
|
int current_process = 0;
|
||
|
std::pair<int, int> current_node_range = node_range(current_process);
|
||
|
int edge_counter = 0;
|
||
|
|
||
|
for (int i = 0; i < total_num_edges; ++i) {
|
||
|
getline(&line, &len, fp);
|
||
|
|
||
|
int fst, snd;
|
||
|
sscanf(line, "%d %d", &fst, &snd);
|
||
|
|
||
|
if (fst >= current_node_range.second) {
|
||
|
if (current_process == 0) {
|
||
|
num_my_edges = edge_counter;
|
||
|
my_edges = (pair *)calloc(num_my_edges, sizeof(pair));
|
||
|
memcpy(my_edges, all_edges, edge_counter * sizeof(pair));
|
||
|
} else {
|
||
|
MPI_Send(&edge_counter, 1, MPI_INT, current_process,
|
||
|
TAG_SEND_NUM_EDGES, MPI::COMM_WORLD);
|
||
|
MPI_Send(all_edges, edge_counter, IntPairType, current_process,
|
||
|
TAG_SEND_EDGES, MPI::COMM_WORLD);
|
||
|
}
|
||
|
|
||
|
// We're starting on the next process
|
||
|
current_process += 1;
|
||
|
current_node_range = node_range(current_process);
|
||
|
edge_counter = 0;
|
||
|
}
|
||
|
|
||
|
all_edges[edge_counter].fst = fst;
|
||
|
all_edges[edge_counter].snd = snd;
|
||
|
|
||
|
edge_counter += 1;
|
||
|
}
|
||
|
|
||
|
// We have to send the last one again here, since it didn't get caught in
|
||
|
// the loop above
|
||
|
MPI_Send(&edge_counter, 1, MPI_INT, current_process, TAG_SEND_NUM_EDGES,
|
||
|
MPI::COMM_WORLD);
|
||
|
MPI_Send(all_edges, edge_counter, IntPairType, current_process,
|
||
|
TAG_SEND_EDGES, MPI::COMM_WORLD);
|
||
|
|
||
|
// int step = num_edges / p;
|
||
|
// for (int i = 0; i < p; ++i) {
|
||
|
// int start = i * step;
|
||
|
// int end = i == p - 1 ? num_edges : start + step;
|
||
|
// int count = end - start;
|
||
|
|
||
|
// counts[i] = count;
|
||
|
// displs[i] = start;
|
||
|
// }
|
||
|
} else {
|
||
|
MPI_Recv(&num_my_edges, 1, MPI_INT, 0, TAG_SEND_NUM_EDGES, MPI::COMM_WORLD,
|
||
|
NULL);
|
||
|
my_edges = (pair *)calloc(num_my_edges, sizeof(pair));
|
||
|
MPI_Recv(my_edges, num_my_edges, IntPairType, 0, TAG_SEND_EDGES,
|
||
|
MPI::COMM_WORLD, NULL);
|
||
|
}
|
||
|
|
||
|
char *buf = (char *)calloc(sizeof(char), 1000);
|
||
|
int offset = 0; // Keep track of the current position in the buffer
|
||
|
for (int i = 0; i < std::min(num_my_edges, 5); i++) {
|
||
|
offset +=
|
||
|
sprintf(buf + offset, "(%d, %d)", my_edges[i].fst, my_edges[i].snd);
|
||
|
if (i < len - 1) {
|
||
|
// Add a separator (e.g., comma or space) if it's not the last
|
||
|
offset += sprintf(buf + offset, " ");
|
||
|
}
|
||
|
}
|
||
|
|
||
|
if (rank == 0) {
|
||
|
fclose(fp);
|
||
|
if (line)
|
||
|
free(line);
|
||
|
}
|
||
|
#pragma endregion
|
||
|
|
||
|
// Each process analyzes the non-local edges that are contained in its portion
|
||
|
// of the graph.
|
||
|
#pragma region
|
||
|
std::map<int, int> node_label_assignment;
|
||
|
std::pair<int, int> my_node_range = node_range(rank);
|
||
|
|
||
|
// Initial node assignment
|
||
|
for (int i = my_node_range.first; i < my_node_range.second; ++i) {
|
||
|
node_label_assignment[i] = i;
|
||
|
}
|
||
|
|
||
|
std::map<int, std::set<int>> adj;
|
||
|
std::set<int> non_local_nodes;
|
||
|
std::set<std::pair<int, int>> non_local_edges;
|
||
|
|
||
|
for (int i = 0; i < num_my_edges; ++i) {
|
||
|
pair edge = my_edges[i];
|
||
|
adj[edge.fst].insert(edge.snd);
|
||
|
|
||
|
if (!(my_node_range.first <= edge.fst && edge.fst < my_node_range.second)) {
|
||
|
non_local_nodes.insert(edge.fst);
|
||
|
non_local_edges.insert(std::make_pair(edge.snd, edge.fst));
|
||
|
}
|
||
|
|
||
|
if (!(my_node_range.first <= edge.snd && edge.snd < my_node_range.second)) {
|
||
|
non_local_nodes.insert(edge.snd);
|
||
|
non_local_edges.insert(std::make_pair(edge.fst, edge.snd));
|
||
|
}
|
||
|
}
|
||
|
#pragma endregion
|
||
|
|
||
|
// Each process determines which processors stores the non-local vertices
|
||
|
// corresponding to the non-local edges.
|
||
|
#pragma region
|
||
|
std::map<int, std::set<int>> send_map;
|
||
|
std::map<int, std::set<int>> recv_map;
|
||
|
|
||
|
for (auto entry : non_local_edges) {
|
||
|
int local_node = entry.first, remote_node = entry.second;
|
||
|
|
||
|
int corresponding_process = remote_node / each_num_nodes;
|
||
|
// The last process gets some extra nodes
|
||
|
if (corresponding_process >= p)
|
||
|
corresponding_process = p - 1;
|
||
|
|
||
|
send_map[corresponding_process].insert(local_node);
|
||
|
recv_map[corresponding_process].insert(remote_node);
|
||
|
}
|
||
|
#pragma endregion
|
||
|
|
||
|
// All the processes are communicating to figure out which process needs to
|
||
|
// send what data to the other processes.
|
||
|
#pragma region
|
||
|
#pragma endregion
|
||
|
|
||
|
// The processes perform the transfers of non-local labels and updates of
|
||
|
// local labels until convergence.
|
||
|
#pragma region
|
||
|
while (true) {
|
||
|
// First, exchange the data that needs to be exchanged
|
||
|
std::vector<int> sendbuf;
|
||
|
std::vector<int> send_counts;
|
||
|
std::vector<int> send_displs;
|
||
|
std::vector<int> recv_counts;
|
||
|
std::vector<int> recv_displs;
|
||
|
|
||
|
int recv_total;
|
||
|
{
|
||
|
int offset = 0;
|
||
|
for (int i = 0; i < p; ++i) {
|
||
|
int count = send_map[i].size();
|
||
|
// std::sort(send_map[i].begin(), send_map[i].end());
|
||
|
for (auto k : send_map[i]) {
|
||
|
sendbuf.push_back(node_label_assignment[k]);
|
||
|
}
|
||
|
send_counts.push_back(count);
|
||
|
send_displs.push_back(offset);
|
||
|
offset += count;
|
||
|
}
|
||
|
|
||
|
offset = 0;
|
||
|
for (int i = 0; i < p; ++i) {
|
||
|
int count = recv_map[i].size();
|
||
|
// std::sort(recv_map[i].begin(), recv_map[i].end());
|
||
|
recv_counts.push_back(count);
|
||
|
recv_displs.push_back(offset);
|
||
|
offset += count;
|
||
|
}
|
||
|
recv_total = offset;
|
||
|
}
|
||
|
|
||
|
std::vector<int> recvbuf(recv_total, 0);
|
||
|
// std::cout << fmt::format("[{}] {} \t|| \t{}", rank,
|
||
|
// fmt::join(send_counts, ", "),
|
||
|
// fmt::join(recv_counts, ", "))
|
||
|
// << std::endl;
|
||
|
MPI::COMM_WORLD.Alltoallv(sendbuf.data(), send_counts.data(),
|
||
|
send_displs.data(), MPI_INT, recvbuf.data(),
|
||
|
recv_counts.data(), recv_displs.data(), MPI_INT);
|
||
|
|
||
|
std::map<int, int> total_node_label_assignment(node_label_assignment);
|
||
|
for (int i = 0; i < p; ++i) {
|
||
|
std::vector<int> ouais(recv_map[i].begin(), recv_map[i].end());
|
||
|
for (int j = 0; j < recv_counts[i]; ++j) {
|
||
|
int remote_node = ouais[j];
|
||
|
int remote_value = recvbuf[recv_displs[i] + j];
|
||
|
total_node_label_assignment[remote_node] = remote_value;
|
||
|
}
|
||
|
}
|
||
|
|
||
|
// For each local node, determine the minimum label out of its neighbors
|
||
|
std::map<int, int> new_labels;
|
||
|
for (int i = my_node_range.first; i < my_node_range.second; ++i) {
|
||
|
int current_value = total_node_label_assignment[i];
|
||
|
int min = current_value;
|
||
|
|
||
|
for (auto neighbor : adj[i]) {
|
||
|
if (total_node_label_assignment[neighbor] < min)
|
||
|
min = total_node_label_assignment[neighbor];
|
||
|
}
|
||
|
|
||
|
if (min < current_value) {
|
||
|
new_labels[i] = min;
|
||
|
}
|
||
|
}
|
||
|
|
||
|
// std::cout << fmt::format("[{}] Helloge {}", rank,
|
||
|
// fmt::join(new_labels, ", "))
|
||
|
// << std::endl;
|
||
|
|
||
|
// Have there been any changes in the labels?
|
||
|
int num_changes = new_labels.size();
|
||
|
int total_changes;
|
||
|
MPI::COMM_WORLD.Allreduce(&num_changes, &total_changes, 1, MPI_INT,
|
||
|
MPI::SUM);
|
||
|
std::cout << fmt::format("[{}] # updates: {} ({})", rank, num_changes,
|
||
|
total_changes)
|
||
|
<< std::endl;
|
||
|
|
||
|
if (total_changes == 0) {
|
||
|
break;
|
||
|
}
|
||
|
|
||
|
// Update the original node assignment
|
||
|
for (auto entry : new_labels) {
|
||
|
node_label_assignment[entry.first] = entry.second;
|
||
|
}
|
||
|
}
|
||
|
#pragma endregion
|
||
|
|
||
|
// The results are gathered to a single process, which writes them to the
|
||
|
// disk.
|
||
|
#pragma region
|
||
|
if (rank == 0) {
|
||
|
std::vector<int> all_assignments(total_num_nodes);
|
||
|
std::map<int, int> label_count;
|
||
|
int ctr = 0;
|
||
|
for (int i = 0; i < p; ++i) {
|
||
|
std::pair<int, int> this_node_range = node_range(i);
|
||
|
int count = this_node_range.second - this_node_range.first;
|
||
|
if (i == 0) {
|
||
|
for (int j = 0; j < count; ++j) {
|
||
|
all_assignments[this_node_range.first + j] =
|
||
|
node_label_assignment[this_node_range.first + j];
|
||
|
label_count[all_assignments[this_node_range.first + j]]++;
|
||
|
}
|
||
|
} else {
|
||
|
MPI::COMM_WORLD.Recv(&all_assignments[this_node_range.first], count,
|
||
|
MPI::INT, i, TAG_SEND_FINAL_RESULT);
|
||
|
for (int j = 0; j < count; ++j) {
|
||
|
label_count[all_assignments[this_node_range.first + j]]++;
|
||
|
}
|
||
|
}
|
||
|
}
|
||
|
|
||
|
std::cout << "Done! " << label_count.size() << std::endl;
|
||
|
} else {
|
||
|
std::vector<int> flat_assignments;
|
||
|
for (int i = my_node_range.first; i < my_node_range.second; ++i) {
|
||
|
flat_assignments.push_back(node_label_assignment[i]);
|
||
|
}
|
||
|
MPI::COMM_WORLD.Send(flat_assignments.data(), flat_assignments.size(),
|
||
|
MPI::INT, 0, TAG_SEND_FINAL_RESULT);
|
||
|
}
|
||
|
#pragma endregion
|
||
|
|
||
|
MPI::Finalize();
|
||
|
return 0;
|
||
|
}
|
||
|
|
||
|
void init_pair_type(MPI_Datatype *out) {
|
||
|
int blocklengths[2] = {1, 1};
|
||
|
MPI_Datatype types[2] = {MPI_INT, MPI_INT};
|
||
|
MPI_Aint offsets[2];
|
||
|
|
||
|
offsets[0] = offsetof(pair, fst);
|
||
|
offsets[1] = offsetof(pair, snd);
|
||
|
|
||
|
MPI_Type_create_struct(2, blocklengths, offsets, types, out);
|
||
|
MPI_Type_commit(out);
|
||
|
}
|